Package: prclust 1.3
Chong Wu
prclust: Penalized Regression-Based Clustering Method
Clustering is unsupervised and exploratory in nature. Yet, it can be performed through penalized regression with grouping pursuit. In this package, we provide two algorithms for fitting the penalized regression-based clustering (PRclust) with non-convex grouping penalties, such as group truncated lasso, MCP and SCAD. One algorithm is based on quadratic penalty and difference convex method. Another algorithm is based on difference convex and ADMM, called DC-ADD, which is more efficient. Generalized cross validation and stability based method were provided to select the tuning parameters. Rand index, adjusted Rand index and Jaccard index were provided to estimate the agreement between estimated cluster memberships and the truth.
Authors:
prclust_1.3.tar.gz
prclust_1.3.zip(r-4.7)prclust_1.3.zip(r-4.6)prclust_1.3.zip(r-4.5)
prclust_1.3.tgz(r-4.6-x86_64)prclust_1.3.tgz(r-4.6-arm64)prclust_1.3.tgz(r-4.5-x86_64)prclust_1.3.tgz(r-4.5-arm64)
prclust_1.3.tar.gz(r-4.7-arm64)prclust_1.3.tar.gz(r-4.7-x86_64)prclust_1.3.tar.gz(r-4.6-arm64)prclust_1.3.tar.gz(r-4.6-x86_64)
prclust_1.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
prclust/json (API)
| # Install 'prclust' in R: |
| install.packages('prclust', repos = c('https://chongwu-biostat.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/chongwu-biostat/prclust/issues
Last updated from:3da1a5ebea. Checks:11 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | NOTE | 111 | ||
| linux-devel-x86_64 | NOTE | 111 | ||
| source / vignettes | OK | 143 | ||
| linux-release-arm64 | NOTE | 101 | ||
| linux-release-x86_64 | NOTE | 114 | ||
| macos-release-arm64 | NOTE | 83 | ||
| macos-release-x86_64 | NOTE | 150 | ||
| macos-oldrel-arm64 | NOTE | 98 | ||
| macos-oldrel-x86_64 | NOTE | 190 | ||
| windows-devel | NOTE | 100 | ||
| windows-release | NOTE | 90 | ||
| windows-oldrel | NOTE | 94 | ||
| wasm-release | OK | 92 |
Exports:clusterStatGCVPRcluststability
Dependencies:Rcpp
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Penalized Regression Based Cluster Method | prclust-package prclust |
| External Evaluation of Cluster Results | clusterStat |
| Calculate the Generalized Cross-Validation Statistic (GCV) | GCV |
| Find the Solution of Penalized Regression-Based Clustering. | PRclust |
| Calculate the stability based statistics | stability |