Package: MiSPU 1.0

MiSPU: Microbiome Based Sum of Powered Score (MiSPU) Tests

There is an increasing interest in investigating how the compositions of microbial communities are associated with human health and disease. In this package, we present a novel global testing method called aMiSPU, that is highly adaptive and thus high powered across various scenarios, alleviating the issue with the choice of a phylogenetic distance. Our simulations and real data analysis demonstrated that aMiSPU test was often more powerful than several competing methods while correctly controlling type I error rates.

Authors:Chong Wu, Wei Pan

MiSPU_1.0.tar.gz
MiSPU_1.0.zip(r-4.5)MiSPU_1.0.zip(r-4.4)MiSPU_1.0.zip(r-4.3)
MiSPU_1.0.tgz(r-4.4-x86_64)MiSPU_1.0.tgz(r-4.4-arm64)MiSPU_1.0.tgz(r-4.3-x86_64)MiSPU_1.0.tgz(r-4.3-arm64)
MiSPU_1.0.tar.gz(r-4.5-noble)MiSPU_1.0.tar.gz(r-4.4-noble)
MiSPU_1.0.tgz(r-4.4-emscripten)MiSPU_1.0.tgz(r-4.3-emscripten)
MiSPU.pdf |MiSPU.html✨
MiSPU/json (API)

Peer review:

Bug tracker:https://github.com/chongwu-biostat/mispu/issues

On CRAN:

6 exports 7 stars 2.23 score 21 dependencies 6 mentions 19 scripts 136 downloads

Last updated 7 years agofrom:baeb8678fa. Checks:OK: 1 NOTE: 8. Indexed: yes.

Exports:correspLeavesGUniFracMiSPUrankingrdirichletsimulateData

Dependencies:apeaSPUclusterdigestdotCall64fieldsgeelatticemapsMASSMatrixmatrixStatsmgcvmvtnormnlmepermuteRcppRcppArmadillospamveganviridisLite